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Plant Molecular Phenology and Climate Feedbacks Mediated by BVOCs

Akiko SatakeTomika Hagiwara, Atsushi J. Nagano, Nobutoshi Yamaguchi, Kanako Sekimoto, Kaori Shiojiri, and Kengo Sudo.

Annual Review of Plant Biology,Vol.75,page15.1-15.23,2024

Three new records of Annonaceae for the flora of Laos.

Ai Nagahama, Shuichiro Tagane, Phetlasy Souladeth, Nobuyuki Tanaka, Tetsukazu Yahara

Thai Forest Bulletin (Botany), Vol.521, Pages.44-48, (2024)

Genetic diversity within a tree and alternative indexes for different evolutionary effects

Yoh Iwasa, Sou Tomimoto, Akiko Satake

Quantitative Plant Biology, Vol.5, e11, (2024)

https://doi.org/10.1017/qpb.2024.9

Fruiting phenology uncoupled from seasonal soil nitrogen supply in masting Fagus crenata trees

Qingmin Han, Daisuke Kabeya, Yoshiyuki Inagaki, Kyotaro Noguchi, Kazumichi Fujii and Akiko Satake

Plant and Soil, Vol.509, Pages.1-12, (2024)

https://doi.org/10.1007/s11104-024-06859-5

Evolutionary ecology of masting: mechanisms, models, and climate change

Michal Bogdziewicz, Dave Kelly, Davide Ascoli, Thomas Caignard, Francesco Chianucci, Elizabeth E Crone, Emilie Fleurot, Jessie J Foest, Georg Gratzer, Tomika Hagiwara, Qingmin Han, Valentin Journé, Léa Keurinck, Katarzyna Kondrat, Ryan McClory, Jalene M La Montagne, Ignacio A Mundo, Anita Nussbaumer, Iris Oberklammer, Misuzu Ohno, Ian S Pearse, Mario B Pesendorfer, Giulia Resente, Akiko Satake, Mitsue Shibata, Rebecca S Snell, Jakub Szymkowiak, Laura Touzot, Rafal Zwolak, Magdalena Zywiec, Andrew J Hacket-Pain

Ecology and Evolution, Vol.39, Issue.9, Pages.851-862, (2024)

https://doi.org/10.1016/j.tree.2024.05.006

Optimal seasonal schedule for producing biogenic volatile organic compounds for tree defense

Yoh Iwasa, Rena Hayashi, Akiko Satake

Journal of Theoretical Biology, Vol.596, 3111986, (2024)

https://doi.org/10.1016/j.jtbi.2024.111986

1-Butanol treatment enhances drought stress tolerance in Arabidopsis thaliana

Thi Nhu Quynh Do, Daisuke Todaka, Maho Tanaka, Satoshi Takahashi, Junko Ishida, Kaori Sako, Atsushi J. Nagano, Yumiko Takebayashi, Yuri Kanno, Masanori Okamoto, Xuan Hoi Pham and Motoaki Seki

Plant Molecular Biology, Vol.114, Article number.86, (2024)

https://doi.org/10.1007/s11103-024-01479-0

Genetic Diversity and Phylogenetic Relationships of Capsicum frutescens in the Asia-Pacific Region: The Pacific Dispersal Route

Sota Yamamoto, Sota Koeda, Ryutaro Nakano, Shota Sakaguchi, Atsushi J. Nagano, Yoshiyuki Tanaka, Fumiya Kondo, Kenichi Matsushima and Nobuhiko Komaki

International Journal of Historical Archaeology, Vol.29, Pages.72-85, (2024)

https://doi.org/10.1007/s10761-024-00750-w

Enhanced decreases in rice evapotranspiration in response to elevated atmospheric carbon dioxide under warmer environments

Hiroki Ikawa, Toshihiro Hasegawa, Etsushi Kumagai, Hitomi Wakatsuki, Yasuyo Sekiyama, Atsushi J. Nagano, Tsuneo Kuwagata

Plant, Cell & Environment, Vol.47, Issue.9, Pages.3514-3527, (2024)

https://doi.org/10.1111/pce.15013

Adaptive radiation of the Callicarpa genus in the Bonin Islands revealed through double‐digest restriction site‐associated DNA sequencing analysis

Suzuki Setsuko, Satoshi Narita, Ichiro Tamaki, Kyoko Sugai, Atsushi J. Nagano, Tokuko Ujino-Ihara, Hidetoshi Kato, Yuji Isagi

Ecology and Evolution, Vol.14, Issue.9, e70216, (2024)

https://doi.org/10.1002/ece3.70216

A Pyrazole Partially Induces Brassinosteroid-Related Gene Expression, Leading to Salt Stress Sensitivity

Minoru Ueda, Satoshi Takahashi, Junko Ishida, Ayumi Yamagami, Takeshi Nakano, Florian Pünner, Mai Akakabe, Yoshihiro Sohtome, Atsushi J. Nagano, Mikiko Sodeoka and Motoaki Seki

Journal of Plant Growth Regulation, Vol.44, Pages.868-878, (2024)

https://doi.org/10.1007/s00344-024-11496-4

Time and dose selective glucose metabolism for glucose homeostasis and energy conversion in the liver

Yifei Pan, Atsushi Hatano, Satoshi Ohno, Keigo Morita, Toshiya Kokaji, Yunfan Bai, Hikaru Sugimoto, Riku Egami, Akira Terakawa, Dongzi Li, Saori Uematsu, Hideki Maehara, Suguru Fujita, Hiroshi Inoue, Yuka Inaba, Atsushi J. Nagano, Akiyoshi Hirayama, Tomoyoshi Soga and Shinya Kuroda

npj Systems Biology and ApplicationsVol.10Article number.107, (2024)

https://doi.org/10.1038/s41540-024-00437-2

Cy-1, a major QTL for tomato leaf curl New Delhi virus resistance, harbors a gene encoding a DFDGD-Class RNA-dependent RNA polymerase in cucumber (Cucumis sativus)

Sota Koeda, Chihiro Yamamoto, Hiroto Yamamoto, Kohei Fujishiro, Ryoma Mori, Momoka Okamoto, Atsushi J. Nagano, Takaaki Mashiko

BMC Plant Biology, Vol.24, Article number.879, (2024)

https://doi.org/10.1186/s12870-024-05591-7

Reducing herbivory in mixed planting by genomic prediction of neighbor effects in the field

Yasuhiro Sato, Rie Shimizu-Inatsugi, Kazuya Takeda, Bernhard Schmid, Atsushi J. Nagano, Kentaro K. Shimizu

Nature Communications, Vol.15, Article number.8467, (2024)

https://doi.org/10.1038/s41467-024-52374-7

DeLTa-Seq: High-Throughput Targeted RNA-Seq of Rice Leaves Without RNA Purification

Makoto Kashima, Yasuyuki Nomura, Atsushi J Nagano

Methods in Molecular Biologya, Vol.2869, Pages.113-121, (2024)

https://doi.org/10.1007/978-1-0716-4204-7_12

Lasy-Seq: A High-Throughput 3' RNA-Seq Method for Large-Scale Transcriptome Profiling in Rice

Natsumi Mori-Moriyama, Atsushi J Nagano

Methods in Molecular Biology, Vol.2869, Pages.123-134, (2024)

https://doi.org/10.1007/978-1-0716-4204-7_13

Phenotypic and Genomic Signatures of Latitudinal Local Adaptation Along With Prevailing Ocean Current in a Coastal Goby

Shotaro Hirase, Atsushi J. Nagano, Kenji Nohara, Kiyoshi Kikuchi, Tomoyuki Kokita

Molecular Ecology, Vol.34, Issue.2, e17599, (2025)

https://doi.org/10.1111/mec.17599

QTL‐Based Evidence of Population Genetic Divergence in Male Territorial Aggressiveness of the Japanese Freshwater Threespine Stickleback

Haruka Yamazaki, Seiichi Mori, Osamu Kishida, Atsushi J. Nagano, Tomoyuki Kokita

Ecology and Evolution, Vol.15, Issue.1, e70795, (2025)

https://doi.org/10.1002/ece3.70795

Differential Stress Responses to Rice Blast Fungal Infection Associated with the Vegetative Growth Phase in Rice

Takuma Koyama, Takumi Tezuka, Atsushi J Nagano, Jiro Murakami, Takanori Yoshikawa

Plants, Vol.14, Issue.2, Pages.241, (2025)

https://doi.org/10.3390/plants14020241

Subgenome-informed statistical modeling of transcriptomes in 25 common wheat accessions reveals cis- and trans- regulation architectures

Yasuyuki Nomura, Moeko Okada, Toshiaki Tameshige, Shotaro Takenaka, Kentaro K Shimizu, Shuhei Nasuda, Atsushi J Nagano

Plant and Cell Physiology, Vol.66, Issue.3, Pages.347-357, (2025)

https://doi.org/10.1093/pcp/pcaf011

Genome-Assisted Gene-Flow Rescued Genetic Diversity Without Hindering Growth Performance in an Inbred Coho Salmon (Oncorhynchus kisutch) Population Selected for High Growth Phenotype

Junya Kobayashi, Ryo Honda, Sho Hosoya, Yuki Nochiri, Keisuke Matsuzaki, Koichi Sugimoto, Atsushi J Nagano, Akira Kumagai, Kiyoshi Kikuchi, Tadahide Kurokawa

Marine Biotechnology, Vol.27, Article number.38, (2025)

https://doi.org/10.1007/s10126-025-10416-1

In Vitro Genome-Wide Identification of Transcription Factor Binding Sites

Taiji Kawakatsu

Methods in Molecular Biology, Vol.2869, Pages.169-182, (2024)

https://doi.org/10.1007/978-1-0716-4204-7_17

Expression and purification of pAG-MNase for CUT&RUN

Taiji Kawakatsu

Methods in Molecular Biology, Vol.2869, Pages.147-155, (2024)

https://doi.org/10.1007/978-1-0716-4204-7_15

Total RNA extraction from rice vegetative tissues using mangetic beads

Kanami Yoshino, Taiji Kawakatsu

Methods in Molecular BiologyVol.2869Pages.7-13, (2024)

https://doi.org/10.1007/978-1-0716-4204-7_2

Identification of lineage-specific cis-trans regulatory networks related to kiwifruit ripening initiation

Eriko Kuwada, Kouki Takeshita, Taiji Kawakatsu, Seiichi Uchida, Takashi Akagi

Plant Journal, Vol.120, Issue.5, Pages.1987-1999, (2024)

https://doi.org/10.1111/tpj.17093

Transcriptome-based prediction for polygenic traits in rice using different gene subsets

Ryokei Tanaka, Tsubasa Kawai, Taiji Kawakatsu, Nobuhiro Tanaka, Matthew Shenton, Shiori Yabe, Yusaku Uga

BMC Genomics, Vol.25, Article number.915, (2024)

https://doi.org/10.1186/s12864-024-10803-3

Multilayered epigenetic control of persistent and stage-specific imprinted genes in rice endosperm

Kaoru Tonosaki, Daichi Susaki, Hatsune Morinaka, Akemi Ono, Hiroki Nagata, Hiroyasu Furuumi, Ken-Ichi Nonomura, Yutaka Sato, Keiko Sugimoto, Luca Comai, Katsunori Hatakeyama, Taiji Kawakatsu, Tetsu Kinoshita

Nature Plants, Vol.10, Pages.1231-1245, (2024)

https://doi.org/10.1038/s41477-024-01754-4

Genetic progress for floral morphology under different nitrogen of rice cultivars in Japan

Hiroyuki Shimono, Reo Sato, Akira Abe, Haruki Nishio, Hiroshi Kudo

Agronomy JournalVol.116Issue.4Pages.1894-1902, (2024)

https://doi.org/10.1002/agj2.21592

Levels of photoactivated phototropin modulate signal transmission during the chloroplast accumulation response

Satoyuki Hirano, Minoru Noguchi, Chonprakun Thagun, Haruki Nishio, Yutaka Kodama

Plant, Cell & Environment, Vol.47, Issue.8, Pages.3215-3226, (2024)

https://doi.org/10.1111/pce.14948

A seasonal switching of integrated leaf senescence controls in an evergreen perennial Arabidopsis

Genki Yumoto, Haruki Nishio, Tomoaki Muranaka, Jiro Sugisaka, Mie N Honjo, Hiroshi Kudoh

Nature CommunicationsVol.15Article number.4719, (2024)

https://doi.org/10.1038/s41467-024-48814-z

Circadian and environmental signal transduction in a natural population of Arabidopsis

Haruki Nishio, Dora L Cano-Ramirez, Tomoaki Muranaka, Luíza Lane de Barros Dantas, Mie N Honjo, Jiro Sugisaka, Hiroshi Kudoh, Antony N Dodd

Proceedings of the National Academy of Sciences of the United States of America, Vol.121, No.35, e2402697121, (2024)

https://doi.org/10.1073/pnas.2402697121

Automatic Calibration of an in-Vehicle Camera based on Structure from Motion

Kazutaka Hayakawa, Haruki Nishio, Yoshiaki Nakagawa, Tomokazu Sato

ITE Transactions on Media Technology and Applications, Vol.13, Issue.1, Pages.136-146, 2025

https://doi.org/10.3169/mta.13.136

Cause or effect: Probing the roles of epigenetics in plant development and environmental responses.

Xuejing Wang, Nobutoshi Yamaguchi

Current Opinion in Plant Biology, Vol.81102569, (2024)

https://doi.org/10.1016/j.pbi.2024.102569

Arabidopsis SDG proteins mediate Polycomb removal and transcription-coupled H3K36 methylation for gene activation

Yicong Wang, Masato Abe, Yuka Kadoya, Takeru SaikiKanae Imai, Xuejing Wang, Taiko Kim To, Soichi Inagaki, Takamasa Suzuki, Tetsuji Kakutani, Toshiro Ito, Nobutoshi Yamaguchi

e-Life, 100905, (2024)

https://doi.org/10.7554/eLife.100905.1

Small molecules and heat treatments reverse vernalization via epigenetic modification in Arabidopsis.

Nana Otsuka, Ryoya Yamaguchi, Hikaru Sawa, Naoya Kadofusa, Nanako Kato, Yasuyuki Nomura, Nobutoshi Yamaguchi, Atsushi J Nagano, Ayato Sato, Makoto Shirakawa, Toshiro Ito

Communications Biology, Vol.8, Article number.108, (2025)

https://doi.org/10.1038/s42003-025-07553-7

Co-option and neofunctionalization of stomatal executors for defence against herbivores in Brassicales.

Makoto Shirakawa, Tomoki Oguro, Shigeo S Sugano, Shohei Yamaoka, Mayu Sagara, Mai Tanida, Kyoko Sunuma, Takuya Iwami, Tatsuyoshi Nakanishi, Keita Horiuchi, Kie Kumaishi, Soma Yoshida, Mutsumi Watanabe, Takayuki Tohge, Takamasa Suzuki, Yasunori Ichihashi, Atsushi Takemiya, Nobutoshi Yamaguchi, Takayuki Kohchi, Toshiro Ito

Nature Plants, Vol.11, Pages.483-504, (2025)

https://doi.org/10.1038/s41477-025-01921-1

Ghost Peaks of Aromatic Metabolites Induced by Corona Discharge Artifacts in LC‐ESI‐MS/MS

Yayoi Hongo, Daisuke Fukuyama, Lee Chuin Chen, Kanako Sekimoto, Hiroshi Watanabe

Journal of Mass Spectrometry, Vol.60, Issue.1, e5102, (2025)

https://doi.org/10.1002/jms.5102

A parasite plant promotes the coexistence of two annual plants.

Naoto Shinohara, Riku Nomiya, Akira Yamawo

Ecology Letters, Vol.27, Issue.10, e14554, (2024)

https://doi.org/10.1111/ele.14554

Contrasting patterns of genetic structure and population demography in two Dicraeus species feeding on bamboo flowers in Japan

Yuzu Sakata, Shun K. Hirota, Ayumi Matsuo, Keito Kobayashi, Naoyuki Nakahama, Yoshihisa Suyama

Biological Journal of the Linnean Society, Vol.143, Issue.2, blad171, (2024)

https://doi.org/10.1093/biolinnean/blad171

Fine-scale clonal structure of the lingonberry Vaccinium Vitis-idea under the nurse plant Pinus pumila vegetation in alpine region, Mt. Norikura

Kensuke Sugimoto, Rio Kawai, Takahiko Koizumi, Ayumi Matsuo, Yoshihisa Suyama, Inoue Mizuki

Journal of Plant Researchi, Vol.137i, Pages.619-626, (2024)

https://doi.org/10.1007/s10265-024-01537-0

Evaluating the potential of interpopulation outbreeding to rescue plant populations facing reproductive failures

Shota Sakaguchi, Shigeru Fukumoto, Kazutoshi Masuda, Hiroaki Setoguchi, Shun K. Hirota, Yoshihisa Suyama, Daisuke Fujiki, Reiichi Miura, Kazuki Yamamoto, Misyo Ota, Masae I. Ishihara

Ecological Research, Vol.39, Issue.5, Pages.694-704, (2024)

https://doi.org/10.1111/1440-1703.12472

Phylogenetic relationships and divergence time of Hydrangea sect. Macrophyllae (Hydrangeaceae) revealed by genome-wide SNPs

Shoki Murakami, Takuro Ito, Tatsuya Uemachi, Shinji Fujii, Hidetoshi Kato, Ayumi Matsuo, Yoshihisa Suyama, Masayuki Maki

Plant Systematics and Evolution, Vol.310, Article number.27, (2024)

https://doi.org/10.1007/s00606-024-01902-5

Evolution of secondary metabolites, morphological structures and associated gene expression patterns in galls induced by four closely related aphid species on a host plant species

Mayu Mizuki, Yohei Kaneko, Yoshitaka Yukie, Yoshihisa Suyama, Shun K. Hirota, Shinichiro Sawa, Minoru Kubo, Akira Yamawo, Michiko Sasabe, Hiroshi Ikeda

Molecular Ecology, Vol.33, Issue.6, e17466, (2024)

https://doi.org/10.1111/mec.17466

Insular environment-dependent introgression from an arid-grassland orchid to a wetland orchid on an oceanic island

Kenji Suetsugu, Shun K. Hirota, Masayuki Ishibashi, Kenya Ishida, Hiroshi Hayakawa, Yoshihisa Suyama

Evolution Letters, Vol.8, Issue.6, Pages.799-812, (2024)

https://doi.org/10.1093/evlett/qrae034

Comprehensive genetic analysis reveals the genetic structure and diversity of Calanthe hoshii (Orchidaceae), an endemic species of the Ogasawara Islands: Implications for appropriate conservation of a critically endangered species

Mayu Katafuchi, Satoshi Narita, Yoshiteru Komaki, Atsushi J. Nagano, Tomohisa Yukawa, Yoshihisa Suyama, Shun K. Hirota, Michimasa Yamasaki, Yuji Isagi

lant Species Biology, Vol.39, Issue.5, Pages.297-305, (2024)

https://doi.org/10.1111/1442-1984.12479

Genetic diversity in the traditional cultivars and wild ancestor of near-threatened Japanese iris (Iris ensata Thunb.)

Makiko Mimura, Marina Takeuchi, Takayuki Kobayashi, Shun K. Hirota, Yoshihisa Suyama, Hirofumi Yamaguchi, Toshihito Tabuchi

Conservation Genetics, Vol.25, Pages.1079-1086, (2024)

https://doi.org/10.1007/s10592-024-01625-7

Secondary contact zone and genetic introgression in closely related haplodiploid social spider mites

Shota Konaka, Shun K. Hirota, Yukie Sato, Naoki Matsumoto, Yoshihisa Suyama, Yoshihiko Tsumura

HeredityVol.133Pages.227-237, (2024)

https://doi.org/10.1038/s41437-024-00708-y

Local versus regional patterns in zoospore dispersal of the kelp Eisenia bicyclis (Laminariales, Phaeophyceae)

Haruka Suzuki, Tomoya Aoki, Chika Mitsuyuki, Yoshihisa Suyama, Yukio Agatsuma, Masakazu N. Aoki

Phycological Research, Vol.72, Issue.4, Pages.238-248, (2024)

https://doi.org/10.1111/pre.12563

A new natural hybrid Goodyera ×kazumae (Orchidaceae) from Tomakomai City, Hokkaido Prefecture, Japan

Kenji Suetsugu, Shun K. Hirota, Yoshihisa Suyama

Taiwania, Vol.69, No.3, Pages.309-316, (2024)

DOI: 10.6165/tai.2024.69.309

Detection of reproductive interference between closely related Salvia species with small‑scale separated distributions by multifaceted pollination and molecular analyses

Sachiko Nishida, Atsuko Takano, Yoshihisa Suyama, Satoshi Kakishima

Journal of Plant Research, Vol.137, Issue.6, Pages.1033-1047, (2024)

https://doi.org/10.1007/s10265-024-01577-6

Multidisciplinary assessment of a restored mangrove ecosystem in Guanabara Bay, Brazil: linking science and conservation

Alan Andrade dos Santos, André Felippe Nunes‑Freitas, Cauê Machado Tompson, Geovane Barbosa, Daiki Takahashi, Yoshihisa Suyama, Catarina Fonseca Lira

Wetlands Ecology and ManagementVol.32Pages.1003-1025, (2024)

https://doi.org/10.1007/s11273-024-10012-5

Towards the understanding of genetic and morphological variations of a highly abundant seaweed-associated marine invertebrate

Pedro Augusto dos Santos Longo, Marianne Azevedo-Silva, Karine Ferreira Ribeiro Mansur, Thais Aparecida Marinho, André Guilherme Madeira, Anete Pereira de Souza, Shun K. Hirota, Yoshihisa Suyama, Gustavo Maruyama Mori, Fosca Pedini Pereira Leite

Estuarine, Coastal and Shelf Science, Vol.309, Issue.1108977, (2024)

https://doi.org/10.1016/j.ecss.2024.108977

Conservation units and the origin of planted individuals of an endangered endemic species Lobelia boninensis in the Ogasawara Islands

Chikashi Hata, Chiharu Endo, Hiroshi Tanaka, Miho Hiruma, Maiko Kumamoto, Izumi Takenaka, Takashi Makino, Kento Niinaka, Yoshihisa Suyama, Shun K. Hirota, Michimasa Yamasaki, Yuji Isagi

Scientific ReportsVol.14Article number.27410, (2024)

https://doi.org/10.1038/s41598-024-78452-w

Freeze-dried fecal microorganisms as an effective biomaterial for the treatment of calves suffering from diarrhea

Jahidul Islam, Natsuki Ohtani, Yu Shimizu, Masae Tanimizu, Yoshiaki Goto, Masumi Sato, Eiji Makino, Toru Shimada, Chise Ueda, Ayumi Matsuo, Yoshihisa Suyama, Yoshifumi Sakai, Niel A. Karrow, Hiroshi Yoneyama, Ryota Hirakawa, Mutsumi Furukawa, Hidekazu Tanaka, Tomonori Nochi

Scientific Reports, Vol.14, Article number.28078, (2024)

https://doi.org/10.1038/s41598-024-79267-5

Evolutionary histories of Camellia japonica and Camellia rusticana

Harue Abe, Saneyoshi Ueno, Ayumi Matsuo, Shun K Hirota, Hiroki Miura, Mong-Huai Su, Yun-Guang Shen, Yoshihiko Tsumura, Yoshihisa Suyama, Zhong-Lang Wang

Ecology and Evolution, Vol.14, Issue.12, e70721, (2024)

https://doi.org/10.1002/ece3.70721

The population structure and demography of an intertidal gastropod Lunella correensis around the Japanese Archipelago affected by past environmental change

Osamu Kagawa, Shun K. Hirota, Takahiro Hirano, Kazuki Kimura, Genki Kobayashi, Yoshihisa Suyama, Satoshi Chiba, Daishi Yamazaki

Marine Biology, Vol.171, Article number.177, (2024)

https://doi.org/10.1007/s00227-024-04497-0

Development of mitochondrial DNA cytochrome c oxidase subunit I primer sets to construct DNA barcoding library using next-generation sequencing

Seikan Kurata, Shota Mano, Naoyuki Nakahama, Shun K Hirota, Yoshihisa Suyama, Motomi Ito

Biodiversity Data Journal, Vol.12, e117014, (2024)

https://bdj.pensoft.net/article/117014/

Refugia within refugium of Geranium yesoense varieties: a follow-up study using chloroplast genome sequencing data of specimens from Mt. Asama, Japan

Seikan Kurata, Shota Sakaguchi, Osamu Kurashima, Risa Ogawa, Yoshihisa Suyama, Sachiko Nishida, Motomi Ito

Biological Journal of the Linnean Society, Vol.142, Issue.1, Pages.1-7, (2024)

https://doi.org/10.1093/biolinnean/blad121

Genetic diversity and structure of Hopea bilitonensis, an endemic Dipterocarp from Belitung Island, Indonesia

Yayan Wahyu C. Kusuma, Muhammad Imam Surya, Siti Kurniawati, Kusuma Dewi Sri Yulita, Destri, Rosniati A. Risna, Enny Sudarmonowati, Ayumi Matsuo, Kazuki Kurita, Yoshihisa Suyama, Yuji Isagi

Journal of Asia-Pacific Biodiversity, Vol.17, Issue.2, Pages.400-405, (2024)

https://doi.org/10.1016/j.japb.2024.01.008

MIG-seq法による近縁品種・菌株等の高精度識別と系統解析

陶山佳久

温故知新, 61巻, Pages.43-49, (2024)

新しいDNA分析技術による個体・集団・種の高精度識別と系統解析

陶山佳久

宮城の植物, 48巻, Pages.1-4, (2024)

Plant Doctor: A hybrid machine learning and image segmentation software

to quantify plant damage in video footage

Marc Josep Montagut Marques, Liu Mingxin, Kuri Thomas Shiojiri,

Tomika Hagiwara, Kayo Hirose, Kaori Shiojiri, Shinjiro Umezu

Measurement, Vol.249, Issue.31117094, (2025)

https://doi.org/10.1016/j.measurement.2025.117094

Soilborne and airborne cues induce different responses in plants

Kaori Shiojiri, Shinnosuke Kagiya, Richard Karban

Plant Ecology, Vol.225, Pages.1195-1199, (2024)

https://doi.org/10.1007/s11258-024-01464-z

Interspecific Variations in Interplant Communication and

Ecological Characteristics in Trees

Akira Yamawo, Tomika Hagiwara, Satomi Yoshida, Misuzu Ohno, Riku Nakajima, Yusuke Mori, Tamayo Hayashi, Hiroki Yamagishi, Kaori Shiojiri

Ecology and Evolution, Vol.15, Issue.1, e70876, (2024)

https://doi.org/10.1002/ece3.70876

Volatile-mediated plant–plant communication in natural

beech forests

Tomika Hagiwara, Kaori Shiojiri, Yoshihisa Suyama, Ayumi Matsuo & Masae

Iwamoto Ishihara

Journal of Plant Interactions, Vol.19, Issue.1, (2024)

https://doi.org/10.1080/17429145.2024.2414103

The Relationship Between Maturation Size and Maximum Tree Size From Tropical to Boreal Climates

Valentin Journé, Michał Bogdziewicz, Benoit Courbaud, Georges Kunstler,Tong Qiu, Qingmin Han, et al.

Ecology Letters, Vol.27, Issue.9, e14500, (2024)

https://doi.org/10.1111/ele.14500

Initial stomatal conductance increases photosynthetic induction of trees leaves more from sunlit than from shaded environments: a meta-analysis

Huixing Kang, Yuan Yu, Xinran Ke, Hajime Tomimatsu, Dongliang Xiong, Louis Santiago, Qingmin Han, Reki Kardiman, Yanhong Tang

Tree Physiology, Vol.44, Issue.11, (2024)

https://doi.org/10.1093/treephys/tpae128

Contrasting effects of prolonged drought and nitrogen addition on growth and non-structural carbohydrate dynamics in coexisting Pinus koraiensis and Fraxinus mandshurica saplings

Xiaoyu Wang, Deliang Lu, Leonie Schönbeck, Yini Han, Shangbin Bai, Dapao Yu, Qingmin Han and Qing-Wei Wang

Forestry Research, Vol.5(2025)

http://dx.doi.org/10.48130/forres-0025-0002

Analysis of the global atmospheric background sulfur budget in a multi-model framework

Christina V. Brodowsky, Timofei Sukhodolov, Gabriel Chiodo, Valentina Aquila, Slimane Bekki, Sandip S. Dhomse, Michael Höpfner, Anton Laakso, Graham W. Mann, Ulrike Niemeier, Giovanni Pitari, Ilaria Quaglia, Eugene Rozanov, Anja Schmidt, Takashi Sekiya, Simone Tilmes, Claudia Timmreck, Sandro Vattioni, Daniele Visioni, Pengfei Yu, Yunqian Zhu, and Thomas Peter

Atmospheric Chemistry and Physics, Vol.24, Issue.9, Pages.5513-5548, (2024)

https://doi.org/10.5194/acp-24-5513-2024

擬似衛星観測データを用いた発散法によるCO2およびNOXの地表排出フラックス推計

山口 将大, 金谷 有剛, 滝川 雅之, Jagat S. H. Bisht, 関谷 高志, Prabir K. Patra, 杉田 考史, 谷本 浩志

日本リモートセンシング学会誌, 44巻, 2号, Pages.156-165, (2024)

GOSAT-GW TANSO-3 L2 NO2プロダクト(T3L2NO2)の導出アルゴリズム

藤縄 環, 林 顯光, 佐藤 知紘, 関谷 高志, 山下 陽介, 中村 綾乃, 杉田 考史, 金谷 有剛, 笠井 康子, 谷本 浩志

日本リモートセンシング学会誌, 44巻, 2号, Pages.127-134, (2024)

The greenhouse gas observation mission with Global Observing SATellite for Greenhouse gases and Water cycle (GOSAT-GW): objectives, conceptual framework and scientific contributions

Hiroshi Tanimoto, Tsuneo Matsunaga, Yu Someya, Tamaki Fujinawa, Hirofumi Ohyama, Isamu Morino, Hisashi Yashiro, Takafumi Sugita, Satoshi Inomata, Astrid Müller, Tazu Saeki, Yukio Yoshida, Yosuke Niwa, Makoto Saito, Hibiki Noda, Yousuke Yamashita, Kohei Ikeda, Nobuko Saigusa, Toshinobu Machida, Matthias Max Frey, Hyunkwang Lim, Priyanka Srivastava, Yoshitaka Jin, Atsushi Shimizu, Tomoaki Nishizawa, Yugo Kanaya, Takashi Sekiya, Prabir Patra, Masayuki Takigawa, Jagat Bisht, Yasko Kasai and Tomohiro O. Sato

Progress in Earth and Planetary Science, Vol.12, Article number.8, (2025)

https://doi.org/10.1186/s40645-025-00684-9

Quantifying uncertainties in satellite NO2 superobservations for data assimilation and model evaluation

Pieter Rijsdijk, Henk Eskes, Arlene Dingemans, K.F. Boersma, Takashi Sekiya, Kazuyuki Miyazaki, Sander Houweling

Geoscientific Model Development, Vol.18, Issue.2, Pages.483-509, (2025)

https://doi.org/10.5194/gmd-18-483-2025

Assessing the relative impacts of satellite ozone and its precursor observations to improve global tropospheric ozone analysis using multiple chemical reanalysis systems

Takashi Sekiya, Emanuele Emili, Kazuyuki Miyazaki, Antje Inness, Zhen Qu, R. Bradley Pierce, Dylan Jones, Helen Worden, William Y. Y. Cheng, Vincent Huijnen, and Gerbrand Koren

Atmospheric Chemistry and Physics, Vol.25, Issue.4, Pages.2243-2268, (2025)

https://doi.org/10.5194/acp-25-2243-2025

East-west variabilities of N2 fixation activity in the subtropical North Pacific Ocean in summer: potential field evidence of the phosphorus and iron co-limitation in the western area

Sachiko Horii, Kazutaka Takahashi, Takuhei Shiozaki, Shigenobu Takeda, Mitsuhide Sato, Tamaha Yamaguchi, Shota Takino, Fuminori Hashihama, Yoshiko Kondo, Toshihiko Takemura, Ken Furuya

Journal of Geophysical Research Oceans, Vol.128, Issue.6, e2022JC019249, (2023)

https://doi.org/10.1029/2022JC019249

Important distinctiveness of SSP3–7.0 for use in impact assessments

Hideo Shiogama, Shinichiro Fujimori, Tomoko Hasegawa, Michiya Hayashi, Yukiko Hirabayashi, Tomoo Ogura, Toshichika Iizumi, Kiyoshi Takahashi and Toshihiko Takemura

Nature Climate Change, Vol.13, Pages.1276-1278, (2023)

https://doi.org/10.1038/s41558-023-01883-2

Impacts of a double-moment bulk cloud microphysics scheme (NDW6-G23) on aerosol fields in NICAM.19 with a global 14 km grid resolution

Daisuke Goto, Tatsuya Seiki, Kentaroh Suzuki, Hisashi Yashiro, and Toshihiko Takemura

Geoscientific Model Development, Vol.17, Issue.2, Pages.651-684, (2024)

https://doi.org/10.5194/gmd-17-651-2024

How well are aerosol-cloud interactions represented in climate models? Part 1: Understanding the sulphate aerosol production from the 2014–15 Holuhraun eruption

George Jordan, Florent Malavelle, Ying Chen, Amy Peace, Eliza Duncan, Daniel G. Partridge, Paul Kim, Duncan Watson-Parris, Toshihiko Takemura, David Neubauer, Gunnar Myhre, Ragnhild Skeie, Anton Laakso and James Haywood

Atmospheric Chemistry and Physics, Vol.24, Issue.3, Pages.1939-1960, (2024)

https://doi.org/10.5194/acp-24-1939-2024

Interactions between atmospheric composition and climate change – progress in understanding and future opportunities from AerChemMIP, PDRMIP, and RFMIP

Stephanie Fiedler, Vaishali Naik, Fiona M. O'Connor, Christopher J. Smith, Paul Griffiths, Ryan J. Kramer, Toshihiko Takemura, Robert J. Allen, Ulas Im, Matthew Kasoar, Angshuman Modak, Steven Turnock, Apostolos Voulgarakis, Duncan Watson-Parris, Daniel M. Westervelt, Laura J. Wilcox, Alcide Zhao, William J. Collins, Michael Schulz, Gunnar Myhre and Piers M. Forster

Geoscientific Model Development, Vol.17, Issue.6, 10.5194/gmd-17-2387-2024, (2024)

https://doi.org/10.5194/gmd-17-2387-2024

Interplay of climate change and air pollution - projection of the under-5 mortality attributable to ambient particulate matter (PM2.5) in South Asia

Wahida Musarrat Anita, Athicha Uttajug, Xerxes Tesoro Seposo, Kengo Sudo, Makiko Nakata, Toshihiko Takemura, Hirohisa Takano, Taku Fujiwara, Kayo Ueda

Environmental Research, Vol.248118292, (2024)

https://doi.org/10.1016/j.envres.2024.118292

Comprehensive impact of changing siberian wildfire severities on air quality, climate, and economy: MIROC5 global climate model's sensitivity assessments

Teppei J. Yasunari, Daiju Narita, Toshihiko Takemura, Shigeto Wakabayashi, Akira Takeshima

Earth's Future, Vol.12, Issue.4, e2023EF004129, (2024)

https://doi.org/10.1029/2023EF004129

Larger dust cooling effect estimated from regionally dependent refractive indices

Hao Wang, Xiaohong Liu, Chenglai Wu, Guangxing Lin, Tie Dai, Daisuke Goto, Qing Bao, Toshihiko Takemura, Guangyu Shi

Geophysical Research Letters, Vol.51, Issue.9, e2023GL107647, (2024)

https://doi.org/10.1029/2023GL107647

Evaluation of CMIP6 model simulations of PM2.5 and its components over China

Fangxuan Ren, Jintai Lin, Chenghao Xu, Jamiu A. Adeniran, Jingxu Wang, Randall V. Martin, Aaron van Donkelaar, Melanie S. Hammer, Larry W. Horowitz, Steven T. Turnock, Naga Oshima, Jie Zhang, Susanne Bauer, Kostas Tsigaridis, Øyvind Seland, Pierre Nabat, David Neubauer, Gary Strand, Twan van Noije, Philippe Le Sager, and Toshihiko Takemura

Geoscientific Model Development, Vol.17, Issue.12, Pages.4821-4836, (2024)

https://doi.org/10.5194/gmd-17-4821-2024

General circulation models simulate negative liquid water path–droplet number correlations, but anthropogenic aerosols still increase simulated liquid water path

Johannes Mülmenstädt, Edward Gryspeerdt, Sudhakar Dipu, Johannes Quaas, Andrew S. Ackerman, Ann M. Fridlind, Florian Tornow, Susanne E. Bauer, Andrew Gettelman, Yi Ming, Youtong Zheng, Po-Lun Ma, Hailong Wang, Kai Zhang, Matthew W. Christensen, Adam C. Varble, L. Ruby Leung, Xiaohong Liu, David Neubauer, Daniel G. Partridge, Philip Stier, and Toshihiko Takemura

Atmospheric Chemistry and Physics, Vol.24, Issue.12, (2024)

https://doi.org/10.5194/egusphere-2024-4

Global assessment of dust source attributions with AeroCom models

Dongchul Kim, Mian Chin, Greg Schuster, Hongbin Yu, Toshihiko Takemura, Paolo Tuccella, Paul Ginoux, Xiaohong Liu, Yang Shi, Hitoshi Matsui, Kostas Tsigaridis, Susanne E. Bauer, Jasper F. Kok, Michael Schulz

Journal of Geophysical Research Atmospheres, Vol.129, Issue.16e2024JD041377, (2024)

https://doi.org/10.1029/2024JD041377

Adjustments to climate perturbations – mechanisms, implications, observational constraints

Johannes Quaas, Timothy Andrews, Nicolas Bellouin, Karoline Block, Olivier Boucher, Paulo Ceppi, Guy Dagan, Sabine Doktorowski, Hannah Marie Eichholz, Piers Forster, Tom Goren, Edward Gryspeerdt, Øivind Hodnebrog, Hailing Jia, Ryan Kramer, Charlotte Lange, Amanda C. Maycock, Johannes Mülmenstädt, Gunnar Myhre, Fiona M. O’Connor, Robert Pincus, Bjørn Hallvard Samset, Fabian Senf, Keith P. Shine, Chris Smith, Camilla Weum Stjern, Toshihiko Takemura, Velle Toll, Casey J. Wall

AGU Advances, Vol.5, Issue.5, e2023AV001144, (2024)

https://doi.org/10.1029/2023AV001144

Biomass burning emission analysis based on MODIS aerosol optical depth and AeroCom multi-model simulations: implications for model constraints and emission inventories

Mariya Petrenko, Ralph Kahn, Mian Chin, Susanne E. Bauer, Tommi Bergman, Huisheng Bian, Gabriele Curci, Ben Johnson, Johannes W. Kaiser, Zak Kipling, Harri Kokkola, Xiaohong Liu, Keren Mezuman, Tero Mielonen, Gunnar Myhre, Xiaohua Pan, Anna Protonotariou, Samuel Remy, Ragnhild Bieltvedt Skeie, Philip Stier, Toshihiko Takemura, Kostas Tsigaridis, Hailong Wang, Duncan Watson-Parris, and Kai Zhang

Atmospheric Chemistry and Physics, Vol.25, Issue.3, Pages.1545-1567, (2025)

https://doi.org/10.5194/acp-25-1545-2025

Machine learning-based global air quality index development using remote sensing and ground-based stations

Tania Septi Anggraini, Hitoshi Irie, Anjar Dimara Sakti, Ketut Wikantika

Environmental Advances, Vol.15, (2024)

https://doi.org/10.1016/j.envadv.2023.100456

Evaluating CHASERV4.0 global formaldehyde (HCHO) simulations using satellite, aircraft, and ground-based remote sensing observations

Hossain Mohammed Syedul Hoque, Kengo Sudo, Hitoshi Irie, Yanfeng He, and Md Firoz Khan

Geoscientific Model Development, Vol.17, Issue.14, Pages.5545-5571, (2024)

https://doi.org/10.22541/essoar.169903618.82717612/v2

Detectability of the potential climate change effect on transboundary air pollution pathways in the downwind area of China

Ying Cai, Hitoshi Irie, Alessandro Damiani, Syuichi Itahashi, Toshihiko Takemura, Pradeep Khatri

Science of The Total Environment, Vol.939, Issue.10, (2024)

https://doi.org/10.1016/j.scitotenv.2024.173490

Long-term observations of NO2, SO2, HCHO, and CHOCHO over the Himalayan foothills: Insights from MAX-DOAS, TROPOMI, and GOME-2

Prajjwal Rawat, Manish Naja, Mahendar C. Rajwar, H. Irie, Christophe Lerot, Mukesh Kumar, S. Lal

Atmospheric Environment, Vol.336, (2024)

https://doi.org/10.1016/j.atmosenv.2024.120746

First evaluation of the GEMS glyoxal products against TROPOMI and ground-based measurements

Eunjo S. Ha, Rokjin J. Park, Hyeong-Ahn Kwon, Gitaek T. Lee, Sieun D. Lee, Seunga Shin, Dong-Won Lee, Hyunkee Hong, Christophe Lerot, Isabelle De Smedt, Thomas Danckaert, Francois Hendrick, and Hitoshi Irie

Atmospheric Measurement Techniques, Vol.17, Issue.21, Pages.6369-6384, (2024)

https://doi.org/10.5194/egusphere-2024-589

A continuous 2011-2022 record of fine particulate matter (PM2.5) in East Asia at daily 2-km resolution from geostationary satellite observations: population exposure and long-term trends

Drew C. Pendergrass, Daniel J. Jacob, Yujin J. Oak, Jeewoo Lee, Minseok Kim, Jhoon Kim, Seoyoung Lee, Shixian Zhai, Hitoshi Irie, and Hong Liao

Atmospheric Environment, Vol.346, (2025)

https://doi.org/10.1016/j.atmosenv.2025.121068

Interplay of Climate Change and Air Pollution- Projection of the under-5 mortality attributable to ambient particulate matter (PM2.5) in South Asia

Wahida Musarrat Anita, Athicha Uttajug, Xerxes Tesoro Seposo, Kengo Sudo, Makiko Nakata, Toshihiko Takemura, Hirohisa Takano, Taku Fujiwara, Kayo Ueda

Environmental Research, Vol.248, (2024)

https://doi.org/10.1016/j.envres.2024.118292

The powerful potential of amino acid menthyl esters for anti-inflammatory and anti-obesity therapies

Seidai Takasawa, Kosuke Kimura, Masato Miyanaga, Takuya Uemura, Masakazu Hachisu, Shinichi Miyagawa, Abdelaziz Ramadan, Satoru Sukegawa, Masaki Kobayashi, Seisuke Kimura, Kenji Matsui, Mitsunori Shiroishi, Kaori Terashita, Chiharu Nishiyama, Takuya Yashiro, Kazuki Nagata, Yoshikazu Higami, Gen-ichiro Arimura

Immunology, Vol.173, Issue.1, Pages.76-92, (2024)

https://doi.org/10.1111/imm.13798

Intricate intracellular kinase network regulates the Spodoptera lituta-derived elicitor response signaling in Arabidopsis

Yoshitake Desaki, Tasuku Kato, Keiichirou Nemoto, Akira Nozawa, Takuya Uemura, Naoya Ninomiya, Tatsuya Sawasaki, Gen‑ichiro Arimura

Journal of Plant Research, Vol.138, Pages.95-103, (2025)

https://doi.org/10.1007/s10265-024-01586-5

Histone Modification-Dependent Transcriptional Regulation of Defence Genes in Early Response of Arabidopsis to Spodoptera litura Attack

Ahmed Yusuf, Kota Wakaya, Takuya Sakamoto, Takuya Uemura, Koudai Okamura, Abdelaziz Ramadan, Akira Nozawa, Takamasa Suzuki, Yayoi Inui, Sachihiro Matsunaga, Tatsuya Sawasaki, Gen-Ichiro Arimura

Plant, Cell & Environment, Vol.48, Issue.5, Pages.3257-3268, (2025)

https://doi.org/10.1111/pce.15345

Cracking the plant VOC sensing code and its practical applications

Gen-ichiro Arimura, Takuya Uemura

Trends in Plant Science, Vol.30, Issue.1, Pages.105-115, (2025)

https://doi.org/10.1016/j.tplants.2024.09.005

Spider mite tetranins elicit different defense responses in different host habitats

Yukiko Endo, Miku Tanaka, Takuya Uemura, Kaori Tanimura, Yoshitake Desaki, Rika Ozawa, Sara Bonzano, Massimo E. Maffei, Tomonori Shinya, Ivan Galis, Gen-ichiro Arimura

The Plant Journal, Vol.121, Issue.5, e70046, (2025)

https://doi.org/10.1111/tpj.70046

Structural requirements of KAI2 ligands for activation of signal transduction

Rito Kushihara, Akihiko Nakamura, Katsuki Takegami, Yoshiya Seto, Yusuke Kato, Hideo Dohra, Toshiyuki Ohnishi, Yasushi Todoroki, and Jun Takeuchi

Proc Natl Acad Sci USA, Vol.122, Issue.8, e2414779122, (2025)

https://doi.org/10.1073/pnas.2414779122

Identification of linalool disaccharide glycoside (linalyl β-vicianoside) in soybean leaves and its implication for herbivore resistance

Juliano Mwenda Ntoruru, Tsukiho Osawa, Toshiyuki Ohnishi, Kenji Matsui

Biosci Biotechnol Biochem, Vol.89, Issue.1, Pages.33-40, (2025)

https://doi.org/10.1093/bbb/zbae144

Phyllosphere C1-microorganisms: their interaction with plants and contribution to the global carbon cycle.

Hiroya Yurimoto

Plant Biotechnology, accepted, (2024)

Methanol-induced transcription factor Mpp1 regulates the coordinated expression of multiple genes to achieve a balanced C1 metabolism in the methylotrophic yeast Candida boidinii

Koichi Inoue, Nono Saso, Kosuke Iwase, Zhenyu Zhai, Takahiro Tsuji, Kazuyoshi Tabata, Rie Sano, Hiroya Yurimoto, Yasuyoshi Sakai

Microbiology Spectrum, Vol.13, Issue.5, e0285324, (2025)

https://doi.org/10.1128/spectrum.02853-24

Physiological role of the FDH1 gene in methylotrophic yeast Komagataella phaffii and carbon recovery as formate during methylotrophic growth of the fdh1-deletion strain.

Junzhang Zhu, Hao-Liang Cai, Shunta Goto, Masaya Shimada, Hiroya Yurimoto, Yasuyoshi Sakai, Takehiko Yoko-o, Yasunori Chiba, Tomoyuki Nakagawa

Journal of Bioscience and Bioengineering, Vol.139, Issue.3, Pages.206-212, (2025)

https://doi.org/10.1016/j.jbiosc.2024.12.007

Methanol chemoreceptor MtpA- and flagellin protein FliC-dependent methylotaxis determines the spaciotemporal colonization of PPFM in the phyllosphere

Shiori Katayama, Kosuke Shiraishi, Kanae Kaji, Kazuya Kawabata, Naoki Tamura, Akio Tani, Hiroya Yurimoto, Yasuyoshi Sakai

bioRxiv, (2024)

https://doi.org/10.1101/2024.08.24.609498

C1酵母の濃度応答性メタノール誘導とペキソファジー制御におけるシグナル伝達

由里本博也, 井上紘一, 阪井康能

化学と生物, 62巻, 9号, Pages.447-454, (2024)

循環型C1バイオエコノミーで活用するメチロトロフの代謝生理機能

由里本博也、阪井康能

環境バイオテクノロジー学会誌, 24巻, 1号, Pages.53-58, (2024)

https://doi.org/10.50963/jenvbio.24.1_53

走査電子顕微鏡を用いたアレイトモグラフィーと光-電子相関顕微鏡解析

豊岡公徳

生体の科学, 75巻, 5号, Pages.408-409, (2024)

https://doi.org/10.11477/mf.2425201902

Class II kinesin-12 facilitates cell plate formation by transporting cell plate materials in the phragmoplast

Moé Yamada, Hironori J. Matsuyama, Noriko Takeda-Kamiya, Mayuko Sato, Kiminori Toyooka

Nature Plants, Vol.11, Pages.340-358, (2025)

https://doi.org/10.1038/s41477-025-01909-x

Precocious cell differentiation occurs in proliferating cells in leaf primordia in Arabidopsis angustifolia3 mutant

Kazune Ezaki, Hiroyuki Koga, Noriko Takeda-Kamiya, Kiminori Toyooka, Takumi Higaki, Shingo Sakamoto, Hirokazu Tsukaya

Frontiers in Plant Science, Vol.15, 1322223, (2024)

https://doi.org/10.3389/fpls.2024.1322223

Integration of cell differentiation and initiation of monoterpenoid indole alkaloid metabolism in seed germination of Catharanthus roseus

Mai Uzaki, Tetsuya Mori, Mayuko Sato, Mayumi Wakazaki, Noriko Takeda‐Kamiya, Kotaro Yamamoto, Akio Murakami, Delia Ayled Serna Guerrero, Chizuko Shichijo, Miwa Ohnishi, Kimitsune Ishizaki, Hidehiro Fukaki, Sarah E. O'Connor, Kiminori Toyooka, Tetsuro Mimura, Masami Yokota Hirai

New Phytologist, Vol.242, Issue.3, Pages.1156-1171, (2024)

https://doi.org/10.1111/nph.19662

Sandwich freezing and freeze substitution of Arabidopsis plant tissues for electron microscopy

Masashi Yamaguchi, Mayuko Sato, Azusa Takahashi-Nakaguchi, Michiyo Okamoto, Kiminori Toyooka, Hiroji Chibana

Microscopy, Vol.73, Issue.6, Pages.517-522, (2024)

https://doi.org/10.1093/jmicro/dfae032

Golgi clustering by the deficiency of COPI-SNARE in Drosophila photoreceptors

Tatsuya Tago, Yumi Yamada, Yumi Goto, Kiminori Toyooka, Yuka Ochi, Takunori Satoh, Akiko K. Satoh

Frontiers in Cell and Developmental Biology, Vol.12, 1442198, (2024)

https://doi.org/10.3389/fcell.2024.1442198

Chloroplasts with clefts and holes: a reassessment of the chloroplast shape using 3D FE-SEM cellular reconstruction of two species of Chlamydomonas

Naoki Sato, Mayuko Sato, Mayumi Wakazaki, Takashi Moriyama, Takashi Hirashima, Kiminori Toyooka

Protoplasma, Vol.262, Pages.207-218, (2024)

https://doi.org/10.1007/s00709-024-01990-7

Host-Graft Synapses Form Functional Microstructures and Shape the Host Light Responses After Stem Cell-Derived Retinal Sheet Transplantation

Ryutaro Akiba, Hung-Ya Tu, Tomoyo Hashiguchi, Yoshiko Takahashi, Kiminori Toyooka, Yoshihiko Tsukamoto, Takayuki Baba, Masayo Takahashi, Michiko Mandai

Investigative Ophthalmology & Visual Science, Vol.65, Issue.12, Pages.8, (2024)

https://doi.org/10.1167/iovs.65.12.8

Incorporation of photosynthetically active algal chloroplasts in cultured mammalian cells towards photosynthesis in animals

Ryota Aoki, Yayoi Inui, Yoji Okabe, Mayuko Sato, Noriko Takeda-Kamiya, Kiminori Toyooka, Koki Sawada, Hayato Morita, Baptiste Genot, Shinichiro Maruyam, Tomo Tatsuya, Kintake Sonoike, Sachihiro Matsunaga

Proceedings of the Japan Academy Series B, Vol.100, Issue.9, Pages.524-536, (2024)

https://doi.org/10.2183/pjab.100.035

Coatomer complex I is required for the transport of SARS-CoV-2 progeny virions from the endoplasmic reticulum-Golgi intermediate compartment.

Ai Hirabayashi, Yukiko Muramoto, Toru Takenaga, Yugo Tsunoda, Mayumi Wakazaki, Mayuko Sato, Yoko Fujita-Fujiharu, Norimichi Nomura, Koji Yamauchi, Chiho Onishi, Masahiro Nakano, Kiminori Toyooka, Takeshi Noda

mBio, Vol.16, No.1, e0333124, (2024)

https://doi.org/10.1128/mbio.03331-24

RudLOV is an optically synchronized cargo transport method revealing unexpected effects of dynasore

Tatsuya Tago, Takumi Ogawa, Yumi Goto, Kiminori Toyooka, Takuro Tojima, Akihiko Nakano, Takunori Satoh, Akiko K Satoh

EMBO Reports, Vol.26, Issue.3, Pages.613-634, (2024)

https://doi.org/10.1038/s44319-024-00342-z

E22G Aβ40 fibril structure and kinetics illuminate how Aβ40 rather than Aβ42 triggers familial Alzheimer's

Mohammad Jafar Tehrani, Isamu Matsuda, Atsushi Yamagata, Yu Kodama, Tatsuya Matsunaga, Mayuko Sato, Kiminori Toyooka, Dan McElheny, Naohiro Kobayashi, Mikako Shirouzu, Yoshitaka Ishii

Nature Communications, Vol.15, Article number.7045, (2024)

https://doi.org/10.1038/s41467-024-51294-w

Arabidopsis DREB26/ERF12 and its close relatives regulate cuticular wax biosynthesis under drought stress condition

Kaoru Urano, Yoshimi Oshima, Toshiki Ishikawa, Takuma Kajino, Shingo Sakamoto, Mayuko Sato, Kiminori Toyooka, Miki Fujita, Maki Kawai-Yamada, Teruaki Taji, Kyonoshin Maruyama, Kazuko Yamaguchi-Shinozaki, Kazuo Shinozaki

The Plant Journal, Vol.120, Issue.5, Pages.2057-2075, (2024)

https://doi.org/10.1111/tpj.17100

Petal abscission is promoted by jasmonic acid-induced autophagy at Arabidopsis petal bases

Yuki Furuta, Haruka Yamamoto, Takeshi Hirakawa, Akira Uemura, Margaret Anne Pelayo, Hideaki Iimura, Naoya Katagiri, Noriko Takeda-Kamiya, Kie Kumaishi, Makoto Shirakawa, Sumie Ishiguro, Yasunori Ichihashi, Takamasa Suzuki, Tatsuaki Goh, Kiminori Toyooka, Toshiro Ito, Nobutoshi Yamaguchi

Nature Communications, Vol.15, Article number.1098, (2024)

https://doi.org/10.1038/s41467-024-45371-3

High-throughput mechanical phenotyping and transcriptomics of single cells

Akifumi Shiomi, Taikopaul Kaneko, Kaori nishikawa, Arata Tsuchida, Takashi Isoshima, Mayuko Sato, Kiminori Toyooka, Kentaro Doi, Hideaki Nishiki, Hurofumi Shintaku

Nature Communications, Vol.15, Article number.3812, (2024)

https://doi.org/10.1038/s41467-024-48088-5

Effective alignment method using a diamond notch knife for correlative array tomography

Yumi Goto, Noriko Takeda-Kamiya, Kaori Yamaguchi, Mikio Yamazaki, Kiminori Toyooka

Microscopy, Vol.73, Issue.5, Pages.446-450, (2024)

https://doi.org/10.1093/jmicro/dfae013

The phosphorylated pathway of serine biosynthesis affects sperm, embryo, and sporophyte development, and metabolism in Marchantia polymorpha

Mengyao Wang, Hiromitsu Tabeta, Kinuka Ohtaka, Ayuko Kuwahara, Ryuichi Nishihama, Toshiki Ishikawa, Kiminori Toyooka, Mayuko Sato, Mayumi Wakazaki, Hiromichi Akashi, Hiroshi Tsugawa, Tsubasa Shoji, Yozo Okazaki, Keisuke Yoshida, Ryoichi Sato, Ali Ferjani, Takayuki Kohchi, Masami Yokota Hirai

Communications Biology, Vol.7, Article number.102, (2024)

https://doi.org/10.1038/s42003-023-05746-6

Microtubule-associated phase separation of MIDD1 tunes cell wall spacing in xylem vessels in Arabidopsis thaliana

Takeshi Higa, Saku T. Kijima, Takema Sasaki, Shogo Takatani, Ryosuke Asano, Yohei Kondo, Mayumi Wakazaki, Mayuko Sato, Kiminori Toyooka, Taku Demura, Hiroo Fukuda, Yoshihisa Oda

Nature Plants, Vol.10, Pages.100-117, (2024)

https://doi.org/10.1038/s41477-023-01593-9

Rhizoviticin is an alphaproteobacterial tailocin that mediates biocontrol of grapevine crown gall disease

Tomoya Ishii, Natsuki Tsuchida, Niarsi Merry Hemelda, Kirara Saito, Jiyuan Bao, Megumi Watanabe, Atsushi Toyoda, Takehiro Matsubara, Mayuko Sato, Kiminori Toyooka, Nobuaki Ishihama, Ken Shirasu, Hidenori Matsui, Kazuhiro Toyoda, Yuki Ichinose, Tetsuya Hayashi, Akira Kawaguchi, Yoshiteru Noutoshi

The ISME Journal, Vol.18, Issue.1, Pages.1-12, (2024)

https://doi.org/10.1093/ismejo/wrad003

高圧凍結CLEM:根端ERボディによるβ-グルコシダーゼの液胞輸送過程の可視化

後藤友美, 佐藤繭子, 豊岡公徳

Plant Morphology, Vol.36, Issue.1, Pages.61-68, (2024)

A florigen-expressing subpopulation of companion cells expresses other small proteins and reveals a nitrogen-sensitive FT repressor

Hiroshi Takagi, Shogo Ito, Jae Sung Shim, Akane Kubota, Andrew K Hempton, Nayoung Lee, Takamasa Suzuki, Chansie Yang, Christine T Nolan, Kerry L Bubb, Cristina M Alexandre, Daisuke Kurihara, Yoshikatsu Sato, Yasuomi Tada, Takatoshi Kiba, Jose L Pruneda-Paz, Christine Queitsch, Josh T Cuperus, Takato Imaizumi

eLife, Vol.14, RP102529, (2025)

https://doi.org/10.7554/eLife.102529.1

Ecological aspects of myxomycetes associated with white and brown wood rot on coarse woody debris in subalpine coniferous forests in Central Japan

Kazunari Takahashi, Yuichi Harakon, Yu Fukasawa

Mycoscience, Vol.65, Issue.2, Pages.86-91, (2024)

https://doi.org/10.47371/mycosci.2024.1.003

Bark beetle outbreaks in Picea abies stands are associated with changes in wood-inhabiting fungal communities and seedling establishment on logs

Yu Fukasawa, Václav Pouska, Radek Bače, Lucie Zíbarová, Yuki Kawasaki, Shunsuke Matsuoka, Hirotoshi Sato, Olga Orman, Kamil Král, Miroslav Svoboda

Fungal Ecology, Vol.68, 101328, (2024)

https://doi.org/10.1016/j.funeco.2023.101328

Factors associated with seedling establishment on logs of different fungal decay types—A seed-sowing experiment

Yu Fukasawa, Hiroyuki Kitabatake

Ecology and Evolution, Vol.14, Issue.6, e11508, (2024)

https://doi.org/10.1002/ece3.11508

Hyphal connection increases net resource utilization of saprotrophic fungal mycelia by improving local performance: A case study of the cord-forming basidiomycete, Phanerochaete velutina

Yu Fukasawa, Koji Kaga, Daisuke Akai, Takayuki Takehi

Fungal Ecology, Vol.71, 101362, (2024)

https://doi.org/10.1016/j.funeco.2024.101362

Electrical integrity and week-long oscillation in fungal mycelia

Yu Fukasawa, Daisuke Akai, Takayuki Takehi, Yutaka Osada

Scientific Reports, Vol.14, Article number.15601, (2024)

https://doi.org/10.1038/s41598-024-66223-6

Spatial resource arrangement influences both network structures and activity of fungal mycelia: A form of pattern recognition?

Yu Fukasawa, Kosuke Hamano, Koji Kaga, Daisuke Akai, Takayuki Takehi

Fungal Ecology, Vol.72, 101387, (2024)

https://doi.org/10.1016/j.funeco.2024.101387

Oak Wilt Disease May Reduce the Initial Decay Rate of Dead Quercus serrata Stems by Altering Fungal Communities in the Wood

Yu Fukasawa, Satsuki Kimura, Yuji Kominami, Masahiro Takagi, Kimiyo Matsukura, Kobayashi Makoto, Satoshi N. Suzuki, Shuhei Takemoto, Nobuaki Tanaka, Mayuko Jomura, Kohmei Kadowaki, Masayuki Ushio, Haruo Kinuura, Satoshi Yamashita

Environmental Microbiology, Vol.27, Issue.1, e70026, (2025)

https://doi.org/10.1111/1462-2920.70026

Seasonal switching of integrated leaf senescence controls in an evergreen perennial Arabidopsis

Genki Yumoto, Haruki Nishio, Tomoaki Muranaka, Jiro Sugisaka, Mie N. Honjo & Hiroshi Kudoh

Nature communications, Vol.15, Issue.1, Article number.4719, (2024)

https://doi.org/10.1038/s41467-024-48814-z

Circadian and environmental signal integration in a natural population of Arabidopsis

Haruki Nishio, Dora L. Cano-Ramirez, Tomoaki Muranaka, Luíza Lane de Barros Dantas, Mie N. Honjo, Jiro Sugisaka, Hiroshi Kudoh, Antony N. Dodd

PNAS, Vol.121, Issue.35, e2402697121, (2024)

https://doi.org/10.1073/pnas.2402697121

Cold-induced degradation of core clock proteins implements temperature compensation in the Arabidopsis circadian clock.

Akari Maeda, Hiromi Matsuo, Tomoaki Muranaka, Norihito Nakamichi

Science Advances, Vol.10, Issue.39, eadq0187, (2024)

https://doi.org/10.1126/sciadv.adq0187

Model-based analysis of the circadian rhythm generation of bioluminescence reporter activity in duckweed

Yu Horikawa, Emiri Watanabe, Shogo Ito, Tokitaka Oyama

bioRxiv, (2024)

https://doi.org/10.1101/2024.05.26.595939

Florigen-producing cells express FPF1-LIKE PROTEIN 1 to accelerate flowering and stem growth in Arabidopsis

Hiroshi Takagi, Nayoung Lee, Andrew K. Hempton, Savita Purushwani, Michitaka Notaguchi, Kota Yamauchi, Kazumasa Shirai, Yaichi Kawakatsu, Susumu Uehara, William G. Albers, Benjamin L.R. Downing, Shogo Ito, Takamasa Suzuki, Takakazu Matsuura, Izumi C. Mori, Nobutaka Mitsuda, Daisuke Kurihara, Tomonao Matsushita, Young Hun Song, Yoshikatsu Sato, Mika Nomoto, Naoyuki Uchida, Yasuomi Tada, Kousuke Hanada, Josh T. Cuperus, Christine Queitsch, and Takato Imaizumi

Dev. Cell., preprint, (2025)

https://doi.org/10.1016/j.devcel.2025.02.003

Atmospheric intermediates at the air-water interface

Shinichi Enami, Naoki Numadate, Tetsuya Hama

The Journal of Physical Chemistry A, Vol.128, Issue.28, Pages.5419-5434, (2024)

大気化学の最前線―第3講 大気不均一化学入門―

江波進一

大気環境学会誌, 59巻, 4号, Pages.A200-A210, (2024)

https://doi.org/10.11298/taiki.59.A200

大気中のヒドロトリオキシド(ROOH)-ポリオキシドの大気化学

江波進一

月刊化学, 80巻, Pages.70-71, (2024)

An absorption model of volatile organic compound by plant leaf: The most influential site in the absorption pathway

Mizuki Yamane, Akira Tani

Atmospheric Environment X, Vol.23, 100274, (2024)

https://doi.org/10.1016/j.aeaoa.2024.100274

Quantifying variabilities in monoterpene emission among natural individuals of an urban-greening species (Quercus phylliraeoides) using a rapid measuring method

Ting-Wei Chang, Shun Tokiwa, Noboru Masui, Akira Tani

Urban Forestry & Urban GreeningVol.94128245, (2024)

https://doi.org/10.1016/j.ufug.2024.128245

Basal emission rates of isoprene and monoterpenes from major tree species in Japan: interspecies and intraspecies variabilities

Akira Tani, Noboru Masui, Ting-Wei Chang, Motonori Okumura and Yutaka Kokubu

Progress in Earth and Planetary Science, Vol.11, Article number.42, (2024)

https://doi.org/10.1186/s40645-024-00645-8

Transpiration and plant hydraulics of Abies veitchii under fluctuating environmental conditions in cool montane forest

Yoshiyuki Miyazawa, Daisuke Sugiura, Taichi Sugiyama, Kojiro Iwamoto , Haruhiko Taneda

Ecological Research, Vol.40, Issue.2, Pages.188-206, (2025)

https://doi.org/10.1111/1440-1703.12529

Survival and growth of three boreal conifer species transplanted to warm sites: Implications for responses to global warming and extreme climatic events.

Susumu Goto, Haruhiko Taneda, Yoko Hisamotoc, Tokuko Ujino-Iharad, and Toshihide Hirao

CCanadian Journal of Forest Research, Vol.55, Pages.1-12, (2025)

https://doi.org/10.1139/cjfr-2024-0154

CH4 emissions from runoff water of Alaskan mountain glaciers

Keiko Konya, Tetsuo Sueyoshi, Go Iwahana, Tomoaki Morishita, Jun Uetake, Masahide Wakita

Scientific Reports, Vol.14, Article number.10558, (2024)

https://doi.org/10.1038/s41598-024-56608-y

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