令和5年度 文部科学省 科学研究費補助金 学術変革領域研究（A）
An improved method for the highly specific detection of transcription start sites
Seki M, Kuze Y, Zhang X, Kurotani K, Notaguchi M, Nishio H, Kudoh H, Suzaki T, Yoshida S, Sugano S, Matsushita T, Suzuki Y.
Nucleic Acids Research, gkad1116, 2023
An ecological transcriptome approach to capture the molecular and physiological mechanisms of mass flowering in Shorea curtisii
Ahmad Husaini Suhaimi, Masaki J. Kobayashi, Akiko Satake, Ching Ching Ng, Soon Leong Lee, Norwati Muhammad, Shinya Numata, Tatsuya Otani, Toshiaki Kondo, Naoki Tani,, Suat Hui Yeoh.
PeerJ,Vol.11, 2023
Assessing the impacts of genetic defects on starch metabolism in Arabidopsis plants using the carbon homeostasis model
Shuichi N. Kudo, Carolina C. M. Bello, Anthony Artins, Camila Caldana, Akiko Satake.
Journal of the Royal Society Interface, Nov;20(208) 2023.
DOI: 10.1098/rsif.2023.0426
AGAMOUSによる花メリステムの細胞増殖停止機構
古田優生, 山口暢俊, 伊藤寿朗
アグリバイオ, 2023年12月号
Plant size, latitude, and phylogeny explain variability in global herbivory
Robinson ML et al. (Herbvar Network, including Yamawo A.)
Science 382 (6671), 2023.
DOI: 10.1126/science.adh8830
Wax on the surface of Phragmites australis leaves provides enemy-free space for the aphid Hyalopterus pruni
Yamawo A., Mukai H.
Biological Journal of the Linnean Society, 2023.
Beyond heat waves: Unlocking epigenetic heat stress memory in Arabidopsis
Haruki Nishio, Taiji Kawakatsu, Nobutoshi Yamaguchi.
Plant Physiology, 2023.
https://doi.org/10.1093/plphys/kiad558
SHI family transcription factors regulate an interspecific barrier
Fujii S, Yamamoto E, Ito S, Tangpranomkorn S, Kimura Y, Miura H, Yamaguchi N, Kato Y, Niidome M, Yoshida A, Shimosato-Asano H, Wada Y, Ito T, Takayama S.
Nature Plants, 2023.
DOI: 10.1038/s41477-023-01535-5
Fuel-Type Independent Parameterization of Volatile Organic Compound Emissions from Western US Wildfires
Kanako Sekimoto*, Matthew M. Coggon, Georgios I. Gkatzelis, Chelsea E. Stockwell, Jeff Peischl, Amber J. Soja, and Carsten Waeneke.
Environmental Science & Technology, August 23, 2023.
https://doi.org/10.1021/acs.est.3c00537
The transcriptional changes underlying the flowering phenology shift of Arabidopsis halleri in response to climate warming
Hideyuki Komoto, Ai Nagahama, Atsuko Miyawaki-Kuwakado, Yuki Hata, Junko Kyozuka, Yui Kajita, Hironori Toyama, Akiko Satake.
Plant, Cell & Environment, Sep 10, 2023.
DOI: 10.1111/pchttps://doi.org/10.1111/pce.14716e.14716
Transcriptional Regulators of Plant Adaptation to Heat Stress
Xuejing Wang, Wui Kiat Nicholas Tan, Fong Yi Chung, Nobutoshi Yamaguchi, Eng Seng Gan, Toshiro Ito.
International Journal of Molecular Sciences, Vol.24, 13297, 2023.
https://doi.org/10.3390/ijms241713297
MIG-seq 法を用いたゲノムワイドSNP 分析による森林遺伝学研究
陶山佳久.
森林遺伝育種, 12巻, 2号, P.63-67, 2023.
https://doi.org/10.32135/fgtb.12.2_63
First record of Thrixspermum annamense (Orchidaceae) from Iriomote Island, Ryukyu Islands, Japan, with discussions on its intraspecific taxonomy
Kenji Suetsugu, Shun K. Hirota, Koji Yonekura, Atsushi Abe, Yoshihisa Suyama and Tian-Chuan Hsu.
Acta Phytotaxonomica et Geobotanica, Vol.74, No.2, P1-9, 2023.
DOI:10.6165/tai.2014.59.4.383
Molecular phylogeny and taxonomy of the genus Nanocnide (Urticaceae) with particular attention to the Ryukyu Islands endemic N. lobata
Satoshi Aoki, Pan Li, Ayumi Matsuo, Yoshihisa Suyama, Motomi Ito.
Phytotaxa, Vol.607, No.1, P23-40, 2023.
https://doi.org/10.11646/phytotaxa.607.1.3
Potential contribution of floral thermogenesis to cold adaptation, distribution pattern, and population structure in skunk cabbage
Mitsuhiko P. Sato, Ayumi Matsuo, Koichi Otsuka, Kohei Takenaka Takano, Masayuki Maki, Kunihiro Okano, Yoshihisa Suyama, Yasuko Ito-Inaba.
Ecology and Evolution, Vol.13,e10319, 2023.
https://doi.org/10.1002/ece3.10319
Geographical genetic structure of Lespedeza cuneata var. cuneata in Japan: Necessity of genetic considerations in slope revegetation
Junichi Imanishi, Ayumi Imanishi, Yoshihisa Suyama, Yuji Isagi.
Landscape and Ecological Engineering,2023.
Phylogeography of the temperate grassland plant Tephroseris kirilowii (Asteraceae) inferred from multiplexed inter‑simple sequence repeat genotyping by sequencing (MIG‑seq) data
Tomoka Sakaba, Akiko Soejima, Shinji Fujii, Hajime Ikeda, Takaya Iwasaki, Hiroaki Saito, Yoshihisa Suyama, Ayumi Matsuo, Andrey E. Kozhevnikov, Zoya V. Kozhevnikova, Hongfeng Wang, Siqi Wang, Jae‑Hong Pak, Noriyuki Fujii.
Journal of Plant Research, Vol.136, P437-452, 2023.
Spiranthes minamitaniana (Orchidaceae), a new orchid species from Japan based on morphological and phylogenetic data
Kenji Suetsugu, Shun K. Hirota, Yoshihisa Suyama.
Phytotaxa,Vol.599, No.3, P139-149, 2023.
https://doi.org/10.11646/phytotaxa.599.3.1
Spiranthes hachijoensis (Orchidaceae), a new species within the S. sinensis species complex in Japan, based on morphological, phylogenetic, and ecological evidence
Suetsugu K, Hirota SK, Hayakawa H, Fujimori S, Ishibashi M, Hsu TC, Suyama Y.
Journal of Plant Research,Vol.136, No.3, P333-348, 2023.
DOI: 10.1007/s10265-023-01448-6
Resurrection of Spicantopsis hancockii (Blechnaceae) as an endemic species to Taiwan -Reidentification of Spicantopsis in the Tokara Islands, Japan
Atsushi Ebihara, Shuichiro Tagane, Shun K. Hirota, Yoshihisa Suyama, Narumi Nakato, Li-Yaung Kuo.
Taiwania, Vol.68, No.2, P148-154, 2023.
Seasonal patterns of sugar components and their functions in branches of Fagus crenata in association with three reproduction events
Daisuke Kabeya and Qingmin Han.
Ecological Research,2023.
https://doi.org/10.1111/1440-1703.12370
Elevated O3 threatens biological communications
Noboru Masuia , Kaori Shiojiri , Evgenios Agathokleousc , Akira Tania , Takayoshi Koike.
Critical Reviews in Environmental Science and Technology, Volume 53, P.1982-2001, 2023.
https://doi.org/10.1080/10643389.2023.2202105
The exposure of field-grown maize seedlings to weed volatiles affects their growth and seed quality
Yusuke Sakurai , Satomi Ishizaki , Shota Izumi ,
Takuma Yoshida, Kaori Shiojiri, Junji Takabayashi.
Frontiers in Plant Science, Volume 14, 2023.
https://doi.org/10.3389/fpls.2023.1141338
Contributions to the flora of Myanmar IX: five new distributional records of flowering plants from Chin State, Kachin State and Tanintharyi Region
Ai Nagahama, Takashi Sugawara, Mu Mu Aung, Axel Dalberg Poulsen, Kate E. Armstrong, Shuichiro Tagane, Nobuyuki Tanaka.
Bulletin of the National Museum of Nature and Science Series B (Botany), 49巻2号, P.49-55, 2023.
https://doi.org/10.50826/bnmnsbot.49.2_49
The evolutionary history of rice azaleas (Rhododendron tschonoskii alliance) involved niche evolution to a montane environment
Watanabe Yoichi, Ichiro Tamaki, Sang-Hun Oh, Atsushi J Nagano, Koichi Uehara, Nobuhiro Tomaru, Harue Abe.
Am J Bot, Apr;110(4), 2023.
DOI: 10.1002/ajb2.16166
The detailed population genetic structure of the rare endangered latid fish akame Lates japonicus with extremely low genetic diversity revealed from single-nucleotide polymorphisms
Takuya Naito, Kouji Nakayama, Hirohiko Takeshima, Yasuyuki Hashiguchi, Tetsuya Akita, Yo Y. Yamasaki, Tappei Mishina, Naohiko Takeshita, Atsushi J. Nagano & Hiroshi Takahashi.
Conservation Genetics, 24, P.523–535, 2023.
https://doi.org/10.1007/s10592-023-01517-2
Genetic population structure of the precious coral Corallium japonicum in the Northwest Pacific
Hiroki Kise, Akira Iguchi, Naoki Saito, Yuki Yoshioka, Koji Uda, Tomohiko Suzuki, Atsushi J. Nagano, Atsushi Suzuki, Nozomu Iwasaki.
Frontiers in Marine Science, Volume 10, 2023.
https://doi.org/10.3389/fmars.2023.1052033
Genetic architectures of postmating isolation and morphology of two highly diverged rockfishes (genus Sebastes)
Nozomu Muto, Takuma Kawasaki, Ryo Kakioka, Atsushi J Nagano, Yuta Shimizu, Shu Inose, Yohei Shimizu, Hiroshi Takahashi.
Journal of Heredity, Volume 114, Issue 3, Pages 231–245, May, 2023.
https://doi.org/10.1093/jhered/esad007
Apoplast-Localized β-Glucosidase Elevates Isoflavone Accumulation in the Soybean Rhizosphere
Hinako Matsuda, Yumi Yamazaki, Eiko Moriyoshi, Masaru Nakayasu, Shinichi Yamazaki, Yuichi Aoki, Hisabumi Takase, Shin Okazaki, Atsushi J Nagano, Akito Kaga, Kazufumi Yazaki, Akifumi Sugiyama.
Plant and Cell Physiology, Volume 64, Issue 5, P.486–500, May, 2023.
https://doi.org/10.1093/pcp/pcad012
Induction of leaf curling in cassava plants by the cassava mealybug Phenacoccus manihoti (Hemiptera: Pseudococcidae)
Shun-ichiro Takano, Yoshinori Utsumi, Atsushi Nagano, Satoshi Takahashi, Akihiro Ezoe, Motoaki Seki, Thi Xuyen Le & Keiji Takasu.
Applied Entomology and Zoology, 58, P.279–290, 2023.
https://doi.org/10.1007/s13355-023-00832-x
Multiple colonizations and hybridization of a freshwater fish group on a satellite island of Sulawesi
Ixchel F. Mandagi, Bayu K. A. Sumarto, Handung Nuryadi, Daniel F. Mokodongan, Sjamsu A. Lawelle, Kawilarang W.A. Masengi, Atsushi J. Nagano, Ryo Kakioka, Jun Kitano, Satoshi Ansai, Junko Kusumi, Kazunori Yamahira.
Molecular Phylogenetics and Evolution, Volume 184, July, 2023.
https://doi.org/10.1016/j.ympev.2023.107804
Genetic differentiation and evolution of broad-leaved evergreen shrub and tree varieties of Daphniphyllum macropodum (Daphniphyllaceae)
Watanabe Yoichi, Sae Matsuzawa, Ichiro Tamaki, Atsushi J. Nagano & Sang-Hun Oh.
Heredity, 2023.
https://doi.org/10.1038/s41437-023-00637-2
A low-coverage 3' RNA-seq to detect homeolog expression in polyploid wheat
Jianqiang Sun, Moeko Okada, Toshiaki Tameshige, Rie Shimizu-Inatsugi, Reiko Akiyama, Atsushi J Nagano, Jun Sese, Kentaro K Shimizu.
NAR Genom Bioinform,2023
A low-coverage 3' RNA-seq to detect homeolog expression in polyploid wheat
Jianqiang Sun, Moeko Okada, Toshiaki Tameshige, Rie Shimizu-Inatsugi, Reiko Akiyama, Atsushi J Nagano, Jun Sese, Kentaro K Shimizu.
NAR Genom Bioinform, Jul 12, lqad067
DOI: 10.1093/nargab/lqad067
History of the terrestrial isopod genus Ligidium in Japan based on phylogeographic analysis
Wakana Harigai, Aya Saito, Chika Zemmoto, Shigenori Karasawa, Touta Yokoi, Atsushi J. Nagano, Hitoshi Suzuki & Masanobu Yamamoto.
BMC Ecology and Evolution, 23, Article number:38, 2023.
https://doi.org/10.1186/s12862-023-02144-8
When to help juveniles, adults, or both: analyzing the evolutionary models of stage-structured mutualism
Takefumi Nakazawa, Noboru Katayama, Shunsuke Utsumi, Akira Yamawo, Masato Yamamichi.
Frontiers in ecology and evolution, Volume 11, 2023.
https://doi.org/10.3389/fevo.2023.1138138
Transcriptome profiles of rice roots under simulated microgravity conditions and following gravistimulation
Noriyuki Kuya, Ryo Nishijima, Yuka Kitomi, Taiji Kawakatsu, Yusaku Uga.
Frontiers in Plant Science, Volume 14, 2023.
https://doi.org/10.3389/fpls.2023.1193042
Statistical analysis of organelle movement using state-space models
Haruki Nishio, Satoyuki Hirano, Yutaka Kodama.
Plant Methods, Volume 19, Article number: 67, 2023.
https://doi.org/10.1186/s13007-023-01038-6
Measurement report: Assessment of Asian emissions of ethane, propane, carbon monoxide, and NOx based on observations from the island of Hateruma
dedeji, A. R., Andrews, S. J., Rowlinson, M. J., Evans, M. J., Lewis, A. C., Hashimoto, S., Mukai, H., Tanimoto, H., Tohjima, Y., and Saito.
Atmos. Chem. Phys. Discuss., 2022.
https://doi.org/10.5194/acp-2022-703
Fuel-type Independent Parameterization of Volatile Organic Compound Emissions from Western US Wildfires
Kanako Sekimoto, Matthew M. Coggon, Georgios I. Gkatzelis, Chelsea E. Stockwell, Jeff Peischl, Amber Soja, Carsten Warneke.
Environmental Science & Technology, Volume 23, issue 10, 2023.
https://doi.org/10.5194/acp-23-5969-2023
Seed Halopriming: A Promising Strategy to Induce Salt Tolerance in Indonesian Pigmented Rice
Yekti Asih Purwestri , Siti Nurbaiti, Sekar Pelangi Manik Putri, Ignasia MargiWahyuni,
Siti Roswiyah Yulyani, Alfino Sebastian, Tri Rini Nuringtyas, and Nobutoshi Yamaguchi.
Plants,Aug 5, 2023.
DOI: 10.3390/plants12152879
Characterization of Leaf Transcriptome in a Tropical Tree Species, Shorea curtisii, over a Flowering Season
Ahmad Husaini SUHAIMI, Masaki J. KOBAYASHI, Akiko SATAKE, Soon Leong LEE, Norwati MUHAMMAD, Tatsuya OTANI, Toshiaki KONDO, Naoki TANI, Suat Hui YEOH.
J -STAGE, 57巻2号, P.139-144, 2023.
https://doi.org/10.6090/jarq.57.139
Seasonal gene expression signatures of delayed fertilization in Fagaceae
Akiko Satake, Kayoko Ohta, Noriko Takeda-Kamiya, Kiminori Toyooka, Junko Kusumi.
Molecular Ecology, 18 July,2023.
https://doi.org/10.1111/mec.17079
Analysis of Volatile Esters and Alkanoic Acids by an Atmospheric Pressure Corona Discharge Ionization Collision-Induced Dissociation Mass Spectrometry in Positive-Ion Mode: Ionization, Fragmentation Patterns, and Discrimination between Isomeric Compounds
Yuto Nishikido, Kanako Sekimoto.
Mass Spectrometry, Volume 12, 2023.
https://doi.org/10.5702/massspectrometry.A0127
The regulation of chromatin configuration at AGAMOUS locus by LFR-SYD-containing complex is critical for reproductive organ development in Arabidopsis
Xiaowei Lin, Tingting Yuan Hong Guo, Yi Guo, Nobutoshi Yamaguchi, Shuge Wang, Dongxia Zhang, Dongmei, Jiayu Li, Qiang Chen, Xinye Liu, Long Zhao, Jun Xiao, Doris Wagner, Sujuan Cui and Hongtao Zhao.
Plant Journal, Jul 21, 2023.
DOI: 10.1111/tpj.16385
AGAMOUS regulates various target genes via cell cycle-coupled H3K27me3 dilution in floral meristems and stamens
Margaret Anne Pelayo, Fumi Morishita, Haruka Sawada, Kasumi Matsushita, Hideaki Iimura, Zemiao He, Liang Sheng Looi, Naoya Katagiri, Asumi Nagamori, Takamasa Suzuki, Marek Širl, Aleš Soukup, Akiko Satake, Toshiro Ito, Nobutoshi Yamaguchi.
Plant Cell,Volume 35, Issue 8, August 2023, Pages 2821–2847
https://doi.org/10.1093/plcell/koad123
Carbon use strategies in shoot and acorn growth of two evergreen broadleaf trees unraveled by seasonal carbohydrate measurements and carbon isotope analysis
Qingmin Han, Daisuke Kabeya, Yoshiyuki Inagaki, Tatsuro Kawasaki, Akiko Satake.
Tree Physiology, tpad072
https://doi.org/10.1093/treephys/tpad072
The molecular clock in long-lived tropical trees is independent of growth rate
Akiko Satake, Ryosuke Imai, Takeshi Fujino, Sou Tomimoto1 Kayoko Ohta,
Mohammad Na’iem, Sapto Indrioko, Widiyatno, Susilo Purnomo, Almudena Mollá–Morales, Viktoria Nizhynska, Naoki Tani, Yoshihisa Suyama, Eriko Sasaki, Masahiro Kasahara.